Non-fiction

• Go Gos Are Go Go (1997, ISBN 0-14-038675-0)
• Match Wits with the Kids (June 2008, ISBN 978-1848310001)^[4]
• What is Myrrh Anyway? (October 2008, ISBN 978-1848310278)^[4]
• YOU Are The Hero: A History of Fighting Fantasy Gamebooks (September 2014, ISBN 978-1-909679-38-2 and ISBN 978-1-909679-36-8)
• YOU Are The Hero Part 2: A History of Fighting Fantasy Gamebooks (September 2017)

Fiction

• Fighting Fantasy adventure gamebooks:
  • Spellbreaker (1993, ISBN 0-14-036427-7; 2007, ISBN 1-84046-807-6)
  • Knights of Doom (1994, ISBN 0-14-036978-3)
  • Curse of the Mummy (1995, ISBN 0-14-037553-8; 2007, ISBN 1-84046-802-5; 2011)
  • Bloodbones (2006, ISBN 1-84046-765-7; 2010, Wizard Books)
  • Howl of the Werewolf (2007, ISBN 1-84046-838-6; 2010, Wizard Books)
  • Stormslayer (2009, Wizard Books)
  • Night of the Necromancer (2010, Wizard Books)
  • Secrets of Salamonis (co-written with Steve Jackson, 2022, Scholastic Books)
• ACE adventure gamebooks:
  • Alice's Nightmare in Wonderland (2015, Snowbooks, ISBN 978-1909679597)
  • The Wicked Wizard of Oz (2015, Snowbooks, ISBN 978-1911390312)
  • Neverland: Here Be Monsters! (based on Peter and Wendy, The Lost World, The Time Machine and King Kong) (2019, Snowbooks, ISBN 978-1911390411)
  • Beowulf Beastslayer (2019, Snowbooks, ISBN 978-1911390664)
  • 'TWAS: The Krampus Night Before Christmas (2019, Snowbooks, ISBN 978-1911390701)
  • Dracula: Curse of the Vampire (based on Bram Stoker's Dracula, with elements of Nosferatu, Frankenstein, and The Lair of the White Worm) (2021, Snowbooks, ISBN 978-1913525002)
  • RONIN 47 (inspired by the Legend of the Forty-Seven Ronin and Kaiju films) (2022, Snowbooks, ISBN 978-1913525187)
• Sonic the Hedgehog gamebooks (with Marc Gascoigne, Puffin Books):
  • Theme Park Panic (1995, ISBN 0-14-037847-2)
  • Stormin' Sonic (1996, ISBN 0-14-037848-0)
• List of Black Library books:
  • The Dead and the Damned (December 2002, ISBN 1-84154-266-0)
  • Crusade for Armageddon (July 2003, ISBN 1-84416-025-4)
  • Magestorm (February 2004, ISBN 1-84416-074-2)
  • Iron Hands (August 2004, ISBN 1-84416-094-7)
  • Necromancer (February 2005, ISBN 1-84416-158-7)
  • Conquest of Armageddon (December 2005, ISBN 1-84416-196-X)
• Pax Britannia (Abaddon Books):
  • Unnatural History (February 2007, ISBN 1-905437-11-0)
  • Leviathan Rising (March 2008, ISBN 1-905437-60-9)
  • Human Nature (January 2009, ISBN 1-905437-86-2)
  • Evolution Expects (May 2009, ISBN 978-1906735050)
  • Blood Royal (August 2010, UK-ISBN 978-1-906735-30-2, US-ISBN 978-1-907519-37-6)
  • Dark Side (September 2011, UK-ISBN 978-1-906735-40-1, US-ISBN 978-1-906735-85-2)
  • Anno Frankenstein (May 2011, UK-ISBN 978-1907519444, US-ISBN 978-1907519451)
• Robin of Sherwood Novelizations:
  • Robin of Sherwood: The Knights Of The Apocalypse. (2016 ^{[ISBN missing]})

• Jonathan Green at the Internet Speculative Fiction Database
• Jonathan Green at the Internet Book List