Acidimicrobiia
Acidimicrobium ferrooxidans
Scientific classification Edit this classification
Domain: Bacteria
Phylum: Actinomycetota
Norris 2013[2]
Class: Acidimicrobiia
Stackebrandt et al. 1997[1]
Type genus
Acidimicrobium
Clark and Norris 1996
Families[3]
Synonyms
  • Acidimicrobiidae Rainey & Ward-Rainey 1997
  • "Actinomarinidae" Ghai et al. 2013

The Acidimicrobiia are a class of Actinomycetota, in which three families, eight genera, and nine species have been described, Acidimicrobium ferrooxidans is the type species of the order.[1]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[3] and National Center for Biotechnology Information (NCBI).[4]

MLST based phylogeny of 30 proteins.[5] 16S rRNA based LTP_08_2023[6][7][8]
Acidimicrobiales

Aciditerrimonas

Acidimicrobiaceae

Acidithrix

Ferrithrix

Ferrimicrobium

Acidimicrobium

Iamiaceae

Aquihabitans

Iamia

Ilumatobacteraceae

Ilumatobacter

"Microtrichaceae"

"Ca. Limnosphaera"

"Ca. Neomicrothrix"

Acidimicrobiales
Acidimicrobiaceae

Acidiferrimicrobium González et al. 2020

Aciditerrimonas

Acidimicrobium

Acidithrix

Ferrimicrobium

Ferrithrix

Ilumatobacteraceae

Desertimonas

Ilumatobacter

Iamiaceae

Aquihabitans

Rhabdothermincola

Actinomarinicola

Iamia

120 marker proteins based GTDB 08-RS214[9][10][11]
Acidimicrobiia
"Actinomarinales"
"Actinomarinaceae"

Ca. "Actinomarina" Ghai et al. 2013

Acidimicrobiales
UBA8190

Aciditerrimonas Itoh et al. 2011

Acidimicrobiaceae

Acidithrix Jones & Johnson 2022

Ferrithrix Johnson et al. 2009

Ferrimicrobium Johnson et al. 2009

Acidimicrobium Clark & Norris 1996

Ilumatobacteraceae

Desertimonas Asem et al. 2018

Ilumatobacter Matsumoto et al. 2009

"Poriferisodalaceae"

"Ca. Poriferisodalis" Nguyen 2022

"Rhabdothermincolaceae"

Rhabdothermincola Liu et al. 2021

Iamiaceae

Aquihabitans Jin et al. 2013

Iamia Kurahashi et al. 2009

"Actinomarinicolaceae"

Actinomarinicola He et al. 2020

"Microtrichaceae"

"Ca. Neomicrothrix" corrig. Blackall et al. 1996 ["Ca. Microthrix" Blackall et al. 1996 non Ragonot 1888]

"Aldehyrespiratoraceae"

"Ca. Aldehyrespirator" Nguyen 2022

"Hopanoidivoracaceae"

"Ca. Hopanoidivorans" Nguyen 2022

"Ca. Poriferisocius" Nguyen 2022

Genera incertae sedis

See also

References

  1. ^ a b Stackebrandt E, Rainey FA, Ward-Rainey NL (1997). "Proposal for a new hierarchic classification system, Actinobacteria classis nov". Int. J. Syst. Bacteriol. 47: 479–491.
  2. ^ Norris PR (2012). "Class II. Acidimicrobiia class. nov.". In Goodfellow M, Kämpfer P, Trujillo ME, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 5 (The Actinobacteria), part B (2nd ed.). New York: Springer. p. 1968.
  3. ^ a b Euzéby JP, Parte AC. "Acidimicrobiia". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 22, 2021.
  4. ^ Sayers; et al. "Acidimicrobiia". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
  5. ^ Hu D, Cha G, Gao B. (2018). "A phylogenomic and molecular markers-based analysis of the class Acidimicrobiia". Frontiers in Microbiology. 9: 987. doi:10.3389/fmicb.2018.00987. PMC 5962788. PMID 29867887.
  6. ^ "The LTP". Retrieved 20 November 2023.
  7. ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
  8. ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  9. ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
  10. ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  11. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
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