Sunflower seedlings, three days after germination
Sunflower time lapse with soil. Cross section, showing how the root and the upper part of the plant grow

Germination is the process by which an organism grows from a seed or spore. The term is applied to the sprouting of a seedling from a seed of an angiosperm or gymnosperm, the growth of a sporeling from a spore, such as the spores of fungi, ferns, bacteria, and the growth of the pollen tube from the pollen grain of a seed plant.

Seed plants

A seed pot used in horticulture for sowing and taking plant cuttings and growing plugs
Germination glass (glass sprouter jar) with a plastic sieve-lid
Brassica campestris germinating seeds
Time-lapse video of mung bean seeds germinating

Germination is usually the growth of a plant contained within a seed resulting in the formation of the seedling. It is also the process of reactivation of metabolic machinery of the seed resulting in the emergence of radicle and plumule. The seed of a vascular plant is a small package produced in a fruit or cone after the union of male and female reproductive cells. All fully developed seeds contain an embryo and, in most plant species some store of food reserves, wrapped in a seed coat. Dormant seeds are viable seeds that do not germinate because they require specific internal or environmental stimuli to resume growth. Under proper conditions, the seed begins to germinate and the embryo resumes growth, developing into a seedling.[clarification needed]

Step 1: Water imbibition, the uptake of water, results in rupture of seed coat. Step 2: The imbibition of the seed coat results in emergence of the radicle (1) and the plumule (2); the cotyledons are unfolded (3).
Step 3: This marks the final step in the germination of the seed, where the cotyledons are expanded, which are the true leaves. Note: Temperature must be kept at an optimum level.

Disturbance of soil can result in vigorous plant growth by exposing seeds already in the soil to changes in environmental factors where germination may have previously been inhibited by depth of the seeds or soil that was too compact. This is often observed at gravesites after a burial.[1]

Seed germination depends on both internal and external conditions. The most important external factors include right temperature, water, oxygen or air and sometimes light or darkness.[2] Various plants require different variables for successful seed germination. Often this depends on the individual seed variety and is closely linked to the ecological conditions of a plant's natural habitat. For some seeds, their future germination response is affected by environmental conditions during seed formation; most often these responses are types of seed dormancy.

Most common annual vegetables have optimal germination temperatures between 75–90 F (24–32 C), though many species (e.g. radishes or spinach) can germinate at significantly lower temperatures, as low as 40 F (4 C), thus allowing them to be grown from seeds in cooler climates. Suboptimal temperatures lead to lower success rates and longer germination periods.

Malted (germinated) barley grains


Some live seeds are dormant and need more time, and/or need to be subjected to specific environmental conditions before they will germinate. Seed dormancy can originate in different parts of the seed, for example, within the embryo; in other cases the seed coat is involved. Dormancy breaking often involves changes in membranes, initiated by dormancy-breaking signals. This generally occurs only within hydrated seeds.[6] Factors affecting seed dormancy include the presence of certain plant hormones, notably abscisic acid, which inhibits germination, and gibberellin, which ends seed dormancy. In brewing, barley seeds are treated with gibberellin to ensure uniform seed germination for the production of barley malt.[2]

Seedling establishment

In some definitions, the appearance of the radicle marks the end of germination and the beginning of "establishment", a period that utilizes the food reserves stored in the seed. Germination and establishment as an independent organism are critical phases in the life of a plant when they are the most vulnerable to injury, disease, and water stress.[2] The germination index can be used as an indicator of phytotoxicity in soils. The mortality between dispersal of seeds and completion of the establishment can be so high that many species have adapted to produce large numbers of seeds.[citation needed]

Germination rate and germination capacity

Germination of seedlings raised from seeds of eucalyptus after three days of sowing

In agriculture and gardening, the germination rate describes how many seeds of a particular plant species, variety or seedlot are likely to germinate over a given period. It is a measure of germination time course and is usually expressed as a percentage, e.g., an 85% germination rate indicates that about 85 out of 100 seeds will probably germinate under proper conditions over the germination period given. Seed germination rate is determined by the seed genetic composition, morphological features and environmental factors.[citation needed] The germination rate is useful for calculating the number of seeds needed for a given area or desired number of plants. For seed physiologists and seed scientists "germination rate" is the reciprocal of time taken for the process of germination to complete starting from time of sowing. On the other hand, the number of seed able to complete germination in a population (i.e. seed lot) is referred to as germination capacity.

Soil salinity is one of the stress factors that can limit the germination rate. Environmental stress activates some stress-related activities [CuZn-superoxide dismutase (SOD), Mn-SOD, L-ascorbate oxidase (AO), DNA polymerase Delta 1 (POLD)-1, Chaperon (CHAPE) and heat shock protein (HSP)-21], genetic template stability and photosynthetic pigment activation. [7]. Application of exogenic glutamine limiting this process. Research carried out on onion seeds shows a reduction in the mean germination time, an increase in the coefficient of of germination velocity, the germination index and germination percentage after administration of exogenous glutamine to plants.[7]

Repair of DNA damage

Seed quality deteriorates with age, and this is associated with accumulation of genome damage.[8] During germination, repair processes are activated to deal with accumulated DNA damage.[9] In particular, single- and double-strand breaks in DNA can be repaired.[10] The DNA damage checkpoint kinase ATM has a major role in integrating progression through germination with repair responses to the DNA damages accumulated by the aged seed.[11]

Dicot germination

The stages of germination of a pea plant: A. seed coat, B. radicle, C. primary root, D. secondary root, E. cotyledon, F. plumule, G. leaf, H. tap root

The part of the plant that first emerges from the seed is the embryonic root, termed the radicle or primary root. It allows the seedling to become anchored in the ground and start absorbing water. After the root absorbs water, an embryonic shoot emerges from the seed. This shoot comprises three main parts: the cotyledons (seed leaves), the section of shoot below the cotyledons (hypocotyl), and the section of shoot above the cotyledons (epicotyl). The way the shoot emerges differs among plant groups.[2]


Epigeal germination (or epigeous germination) is a botanical term indicating that the germination takes place above the ground. In epigeal germination, the hypocotyl elongates and forms a hook, pulling rather than pushing the cotyledons and apical meristem through the soil. Once it reaches the surface, it straightens and pulls the cotyledons and shoot tip of the growing seedlings into the air. Beans, tamarind, and papaya are examples of plants that germinate this way.[2]


Germination can also be done by hypogeal germination (or hypogeous germination), where the epicotyl elongates and forms the hook. In this type of germination, the cotyledons stay underground where they eventually decompose. Peas, chickpeas and mango, for example, germinate this way.[12]

Monocot germination

In monocot seeds, the embryo's radicle and cotyledon are covered by a coleorhiza and coleoptile, respectively. The coleorhiza is the first part to grow out of the seed, followed by the radicle. The coleoptile is then pushed up through the ground until it reaches the surface. There, it stops elongating and the first leaves emerge.[2]

Precocious germination

When a seed germinates without undergoing all four stages of seed development, i.e., globular, heart shape, torpedo shape, and cotyledonary stage, it is known as precocious germination.[citation needed]

Pollen germination

Another germination event during the life cycle of gymnosperms and flowering plants is the germination of a pollen grain after pollination. Like seeds, pollen grains are severely dehydrated before being released to facilitate their dispersal from one plant to another. They consist of a protective coat containing several cells (up to 8 in gymnosperms, 2–3 in flowering plants). One of these cells is a tube cell. Once the pollen grain lands on the stigma of a receptive flower (or a female cone in gymnosperms), it takes up water and germinates. Pollen germination is facilitated by hydration on the stigma, as well as by the structure and physiology of the stigma and style.[2] Pollen can also be induced to germinate in vitro (in a petri dish or test tube).[13][14]

During germination, the tube cell elongates into a pollen tube. In the flower, the pollen tube then grows towards the ovule where it discharges the sperm produced in the pollen grain for fertilization. The germinated pollen grain with its two sperm cells is the mature male microgametophyte of these plants.[2]


Since most plants carry both male and female reproductive organs in their flowers, there is a high risk of self-pollination and thus inbreeding. Some plants use the control of pollen germination as a way to prevent this self-pollination. Germination and growth of the pollen tube involve molecular signaling between stigma and pollen. In self-incompatibility in plants, the stigma of certain plants can molecularly recognize pollen from the same plant and prevent it from germinating.[15]

Spore germination

Germination can also refer to the emergence of cells from resting spores and the growth of sporeling hyphae or thalli from spores in fungi, algae and some plants.

Conidia are asexual reproductive (reproduction without the fusing of gametes) spores of fungi which germinate under specific conditions. A variety of cells can be formed from the germinating conidia. The most common are germ tubes which grow and develop into hyphae. The initial formation and subsequent elongation of the germ tube in the fungus Aspergillus niger has been captured in 3D using holotomography microscopy. Another type of cell is a conidial anastomosis tube (CAT); these differ from germ tubes in that they are thinner, shorter, lack branches, exhibit determinate growth and home toward each other. Each cell is of a tubular shape, but the conidial anastomosis tube forms a bridge that allows fusion between conidia.[16][17]

3D-visualization of Aspergillus niger spore germination. This image has been captured using holotomography microscopy.

Resting spores

In resting spores, germination involves cracking the thick cell wall of the dormant spore. For example, in zygomycetes the thick-walled zygosporangium cracks open and the zygospore inside gives rise to the emerging sporangiophore. In slime molds, germination refers to the emergence of amoeboid cells from the hardened spore. After cracking the spore coat, further development involves cell division, but not necessarily the development of a multicellular organism (for example in the free-living amoebas of slime molds).[2]

Ferns and mosses

In plants such as bryophytes, ferns, and a few others, spores germinate into independent gametophytes. In the bryophytes (e.g., mosses and liverworts), spores germinate into protonemata, similar to fungal hyphae, from which the gametophyte grows. In ferns, the gametophytes are small, heart-shaped prothalli that can often be found underneath a spore-shedding adult plant.[2]


Bacterial spores can be exospores or endospores which are dormant structures produced by a number of different bacteria. They have no or very low metabolic activity and are formed in response to adverse environmental conditions.[18] They allow survival and are not a form of reproduction.[19] Under suitable conditions the spore germinates to produce a viable bacterium. Endospores are formed inside the mother cell, whereas exospores are formed at the end of the mother cell as a bud.[20]

Light-stimulated germination

As mentioned earlier, light can be an environmental factor that stimulates the germination process. The seed needs to be able to determine when is the perfect time to germinate and they do that by sensing environmental cues. Once germination starts, the stored nutrients that have accumulated during maturation start to be digested which then supports cell expansion and overall growth.[21] Within light-stimulated germination, phytochrome B (PHYB) is the photoreceptor that is responsible for the beginning stages of germination. When red light is present, PHYB is converted to its active form and moves from the cytoplasm to the nucleus where it upregulates the degradation of PIF1. PIF1, phytochrome-interaction-factor-1, negatively regulates germination by increasing the expression of proteins that repress the synthesis of gibberellin (GA), a major hormone in the germination process.[22] Another factor that promotes germination is HFR1 which accumulates in light in some way and forms inactive heterodimers with PIF1.[23]

Although the exact mechanism is not known, nitric oxide (NO) plays a role in this pathway as well. NO is thought to repress PIF1 gene expression and stabilises HFR1 in some way to support the start of germination.[21] Bethke et al. (2006) exposed dormant Arabidopsis seeds to NO gas and within the next 4 days, 90% of the seeds broke dormancy and germinated. The authors also looked at how NO and GA effects the vacuolation process of aleurone cells that allow the movement of nutrients to be digested. A NO mutant resulted in inhibition of vacuolation but when GA was later added the process was active again leading to the belief that NO is prior to GA in the pathway. NO may also lead to the decrease in sensitivity of abscisic acid (ABA), a plant hormone largely responsible for seed dormancy.[24] The balance between GA and ABA is important. When ABA levels are higher than GA then that leads to dormant seeds and when GA levels are higher, seeds germinate.[25] The switch between seed dormancy and germination needs to occur at a time when the seed has the best chances of surviving and an important cue that begins the process of seed germination and overall plant growth is light.[citation needed]

See also


  1. ^ Forensic Botany. Wiley-Blackwell. 2012. p. 10.
  2. ^ a b c d e f g h i j k l m n Raven PH, Evert RF, Eichhorn SE (2005). Biology of Plants (7th ed.). New York: W.H. Freeman and Company Publishers. pp. 504–508. ISBN 978-0-7167-1007-3.
  3. ^ Siegel SM, Rosen LA (1962). "Effects of Reduced Oxygen Tension on Germination and Seedling Growth". Physiologia Plantarum. 15 (3): 437–444. doi:10.1111/j.1399-3054.1962.tb08047.x.
  4. ^ Magneschi, Leonardo; Perata, Pierdomenico (25 July 2008). "Rice germination and seedling growth in the absence of oxygen". Annals of Botany. 103 (2): 181–196. doi:10.1093/aob/mcn121. PMC 2707302. PMID 18660495. Retrieved 27 March 2022.
  5. ^ Baskin CC, Baskin JM (2014). Variation in Seed Dormancy and Germination within and between Individuals and Populations of a Species. Seeds: Ecology, Biogeography, and, Evolution of Dormancy and Germination. Burlington: Elsevier Science. pp. 5–35. ISBN 9780124166837.
  6. ^ Bewley JD, Black M, Halmer P (2006). The encyclopedia of seeds: science, technology and uses Cabi Series. p. 203. ISBN 978-0-85199-723-0.
  7. ^ a b Ulukapi, Kamile; Nasircilar, Ayse Gul (February 2024). "The role of exogenous glutamine on germination, plant development and transcriptional expression of some stress-related genes in onion under salt stres". Folia Horticulturae. 36 (1). Polish Society of Horticultural Science: 1–17. doi:10.2478/fhort-2024-0002. S2CID 19887643.
  8. ^ Waterworth WM, Bray CM, West CE (June 2015). "The importance of safeguarding genome integrity in germination and seed longevity". Journal of Experimental Botany. 66 (12): 3549–58. doi:10.1093/jxb/erv080. PMID 25750428.
  9. ^ Koppen G, Verschaeve L (2001). "The alkaline single-cell gel electrophoresis/comet assay: a way to study DNA repair in radicle cells of germinating Vicia faba". Folia Biologica. 47 (2): 50–4. PMID 11321247.
  10. ^ Waterworth WM, Masnavi G, Bhardwaj RM, Jiang Q, Bray CM, West CE (September 2010). "A plant DNA ligase is an important determinant of seed longevity". The Plant Journal. 63 (5): 848–60. doi:10.1111/j.1365-313X.2010.04285.x. PMID 20584150.
  11. ^ Waterworth WM, Footitt S, Bray CM, Finch-Savage WE, West CE (August 2016). "DNA damage checkpoint kinase ATM regulates germination and maintains genome stability in seeds". Proceedings of the National Academy of Sciences of the United States of America. 113 (34): 9647–52. Bibcode:2016PNAS..113.9647W. doi:10.1073/pnas.1608829113. PMC 5003248. PMID 27503884.
  12. ^ Sadhu MK (1989). Plant propagation. New Age International. p. 61. ISBN 978-81-224-0065-6.
  13. ^ Martin FW (June 1972). "In vitro measurement of pollen tube growth inhibition". Plant Physiology. 49 (6): 924–5. doi:10.1104/pp.49.6.924. PMC 366081. PMID 16658085.
  14. ^ Pfahler PL (January 1981). "In vitro germination characteristics of maize pollen to detect biological activity of environmental pollutants". Environmental Health Perspectives. 37: 125–32. doi:10.2307/3429260. JSTOR 3429260. PMC 1568653. PMID 7460877.
  15. ^ Takayama S, Isogai A (2005). "Self-incompatibility in plants". Annual Review of Plant Biology. 56 (1): 467–89. doi:10.1146/annurev.arplant.56.032604.144249. PMID 15862104. S2CID 1196223.
  16. ^ Roca MG, Davide LC, Davide LM, Mendes-Costa MC, Schwan RF, Wheals AE (November 2004). "Conidial anastomosis fusion between Colletotrichum species". Mycological Research. 108 (Pt 11): 1320–6. CiteSeerX doi:10.1017/S0953756204000838. PMID 15587065.
  17. ^ Roca MG, Arlt J, Jeffree CE, Read ND (May 2005). "Cell biology of conidial anastomosis tubes in Neurospora crassa". Eukaryotic Cell. 4 (5): 911–9. doi:10.1128/EC.4.5.911-919.2005. PMC 1140100. PMID 15879525.
  18. ^ J.-M. Ghuysen; R. Hakenbeck (9 February 1994). Bacterial Cell Wall. Elsevier. pp. 167–. ISBN 978-0-08-086087-9.
  19. ^ Eldra Solomon; Linda Berg; Diana W. Martin (15 September 2010). Biology. Cengage Learning. pp. 554–. ISBN 978-0-538-74125-5.
  20. ^ Encyclopedia Britannica (2002). Encyclopedia britannica. Encyclopedia Britannica. p. 580. ISBN 978-0-85229-787-2.
  21. ^ a b Penfield S (September 2017). "Seed dormancy and germination". Current Biology. 27 (17): R874–R878. Bibcode:2017CBio...27.R874P. doi:10.1016/j.cub.2017.05.050. PMID 28898656.
  22. ^ de Wit M, Galvão VC, Fankhauser C (April 2016). "Light-Mediated Hormonal Regulation of Plant Growth and Development". Annual Review of Plant Biology. 67: 513–37. doi:10.1146/annurev-arplant-043015-112252. PMID 26905653.
  23. ^ Li R, Jia Y, Yu L, Yang W, Chen Z, Chen H, Hu X (February 2018). "Nitric oxide promotes light-initiated seed germination by repressing PIF1 expression and stabilizing HFR1". Plant Physiology and Biochemistry. 123: 204–212. Bibcode:2018PlPB..123..204L. doi:10.1016/j.plaphy.2017.11.012. PMID 29248678.
  24. ^ Bethke PC, Libourel IG, Aoyama N, Chung YY, Still DW, Jones RL (March 2007). "The Arabidopsis aleurone layer responds to nitric oxide, gibberellin, and abscisic acid and is sufficient and necessary for seed dormancy". Plant Physiology. 143 (3): 1173–88. doi:10.1104/pp.106.093435. PMC 1820924. PMID 17220360.
  25. ^ Shu K, Meng YJ, Shuai HW, Liu WG, Du JB, Liu J, Yang WY (November 2015). "Dormancy and germination: How does the crop seed decide?". Plant Biology. 17 (6): 1104–12. Bibcode:2015PlBio..17.1104S. doi:10.1111/plb.12356. PMID 26095078.

Further reading

  • Rajjou L, Duval M, Gallardo K, Catusse J, Bally J, Job C, Job D (2012). "Seed germination and vigor" (PDF). Annual Review of Plant Biology. 63: 507–33. doi:10.1146/annurev-arplant-042811-105550. PMID 22136565.
  • Deno NC (1980). Seed Germination: Theory and Practice. State College, PA. OCLC 918148836. An extensive study of the germination rates of a huge variety of seeds under different experimental conditions, including temperature variation and chemical environment((cite book)): CS1 maint: location missing publisher (link)