The following is a list of Sites of Special Scientific Interest in the North East Fife Area of Search, in Scotland. For other areas, see List of SSSIs by Area of Search.

• Ballo and Harperleas Reservoirs
• Balmerino - Wormit Shore
• Bankhead Moss
• Barnsmuir Coast
• Black Loch (Abdie)
• Cameron Reservoir
• Cassindonald Moss
• Craighall Den
• Craigmead Meadows
• Dunbog Bog
• Earlshall Muir
• Eden Estuary
• Fife Ness Coast
• Firth of Forth
• Fleecefaulds Meadow
• Flisk Wood
• Inner Tay Estuary
• Isle of May
• Kilconquhar Loch
• Lacesston Muir and Glen Burn Gorge
• Lady Loch
• Lindores Loch
• Lochmill Loch
• Morton Lochs
• North Fife Heaths
• Pickletillem Marsh
• St Andrews - Craig Hartle
• St Michaels Wood Marshes
• Swinky Muir
• Tayport-Tentsmuir Coast
• Torflundie Mire
• Turflundie Wood
• Waltonhill and Cradle Den