This is a list of the weekly Canadian RPM magazine[n 1] number one Top Singles chart of 1969.[n 2][n 3]
| Volume:Issue | Issue Date(s) | Song | Artist |
| 10:19 | 6 January | "Wichita Lineman" | Glen Campbell |
| 10:20 | 13 January | "Soulful Strut" | Young-Holt Unlimited |
| 10:21 | 20 January | "I Started a Joke" | Bee Gees |
| 10:22 | 27 January | ||
| 10:23 | 3 February | "Crimson and Clover" | Tommy James and the Shondells |
| 10:24 | 10 February | "Touch Me" | The Doors |
| 10:25 | 17 February | "Worst That Could Happen" | The Brooklyn Bridge |
| 10:26 | 24 February | "Build Me Up Buttercup" | The Foundations |
| 11:1 | 3 March | "You Showed Me" | The Turtles |
| 11:2 | 10 March | "This Magic Moment" | Jay and the Americans |
| 11:3 | 17 March | "Indian Giver" | 1910 Fruitgum Company |
| 11:4 | 24 March | "Dizzy" | Tommy Roe |
| 11:5 | 31 March | "Time of the Season" | The Zombies |
| 11:6 | 7 April | "Aquarius/Let the Sunshine In" | The 5th Dimension |
| 11:7 | 14 April | ||
| 11:8 | 21 April | ||
| 11:9 | 28 April | "You've Made Me So Very Happy" | Blood, Sweat & Tears |
| 11:10 | 5 May | ||
| 11:11 | 12 May | "Hair" | The Cowsills |
| 11:12 | 19 May | "Get Back" | The Beatles |
| 11:13 | 26 May | ||
| 11:14 | 2 June | ||
| 11:15 | 9 June | ||
| 11:16 | 16 June | ||
| 11:17 | 23 June | ||
| 11:18 | 30 June | "Good Morning Starshine" | Oliver |
| 11:19 | 7 July | "Spinning Wheel" | Blood, Sweat & Tears |
| 11:20 | 14 July | ||
| 11:21 | 21 July | ||
| 11:23[n 4] | 28 July | "Crystal Blue Persuasion" | Tommy James and the Shondells |
| 11:24 | 2 August | "In the Year 2525" | Zager and Evans |
| 11:25 | 9 August | "Baby, I Love You" | Andy Kim |
| 11:26 | 16 August | ||
| 12:1 | 23 August | "When I Die" | Motherlode |
| 12:2 | 30 August | ||
| 12:3 | 6 September | "Laughing" | The Guess Who |
| 12:4 | 13 September | "Sugar, Sugar" | The Archies |
| 12:5 | 20 September | ||
| 12:6 | 27 September | ||
| 12:7 | 4 October | "Jean" | Oliver |
| 12:8 | 11 October | "Everybody's Talkin'" | Nilsson |
| 12:9 | 18 October | "Suspicious Minds" | Elvis Presley |
| 12:10 | 25 October | ||
| 12:11 | 1 November | ||
| 12:12 | 8 November | "Tracy" | The Cuff Links |
| 12:13 | 15 November | "Something" | The Beatles |
| 12:14 | 22 November | ||
| 12:15 | 29 November | ||
| 12:16 | 6 December | ||
| 12:17 | 13 December | "And When I Die" | Blood, Sweat & Tears |
| 12:18 | 20 December | ||
| 12:19 | 27 December | "Leaving on a Jet Plane" | Peter, Paul and Mary |