This is a list of rivers in Botswana. This list is arranged by drainage basin, with respective tributaries indented under each larger stream's name.

Atlantic Ocean

• Orange River
  • Molopo River
    • Nossob River
    • Moselebe River

Indian Ocean

• Zambezi River
  • Cuando River (Chobe River) (Linyanti River)
    • Makwegana River (Selinda Spillway) (receives outflow from the Okavango during floods)
• Limpopo River
  • Shashe River
    • Ramokgwebana River
    • Tati River
  • Motloutse River
  • Lotsane River
  • Serorome River
  • Notwane River
    • Metsimotlhabe River
  • Marico River

Okavango Delta

• Okavango River
  • Ngamaseri River
• Khwai River
• Eiseb River
• Khaudum River

Makgadikgadi Pan

• Boteti River (flows out of the Okavango Delta in rainy seasons)
  • Thamalakane River
• Nata River
  • Tutume River
• Semowane River
• Mosetse River
• Lepashe River
• Mosope River

Kalahari Desert

• Okwa River