By tributary
Missouri River
- Cheyenne River (SD)
- Hat Creek
- White River
- Niobrara River
- Burgess Creek
- Bingham Creek
- Snake River
- Long Pine Creek
- Keya Paha River
- Verdigre Creek
- Schindler Creek
- Soldier Creek
- Pishel Creek
- Steel Creek
- Red Otter Creek
- Sand Creek
- Louse Creek
- Redbird Creek
- Eagle Creek
- Turkey Creek
- Brush Creek
- Little Sandy Creek
- Big Sandy Creek
- Beaver Creek
- Clay Creek
- Otter Creek
- Simpson Creek
- Big Anne Creek
- Ash Creek
- Oak Creek
- Willow Creek
- Rock Creek
- Laughing Water Creek
- Coon Creek
- Tarbell Creek
- Elk Creek
- Wyman Creek
- Long Pine Creek
- Beeman Creek
- Rickman Creek
- Ponca Creek
- Dutch Creek
- Plum Creek
- Fairfield Creek
- Papillion Creek
- Platte River
- North Platte River
- South Platte River
- Wood River
- Loup River
- North Loup River
- Calamus River
- Middle Loup River
- Cedar River
- North Loup River
- Elkhorn River
- South Fork Elkhorn River
- North Fork Elkhorn River
- Logan Creek Dredge
- Rock Creek
- Salt Creek
- Oak Creek
- Stevens Creek
- Middle Creek
- Antelope Creek
- Elk Creek
- Beal Slough
- Haines Branch
- Cardwell Branch
- Lynn Creek
- Deadman's Run
- Little Salt Creek
- Nishnabotna River
- Little Nemaha River
- Big Nemaha River
- Kansas River (KS)
- Republican River
- North Fork Republican River
- Arikaree River
- Buffalo Creek
- Rock Creek
- South Fork Republican River
- Frenchman Creek
- Blackwood Creek
- Driftwood Creek
- Red Willow Creek
- Medicine Creek
- Sappa Creek
- Big Blue River
- West Fork Big Blue River
- Little Blue River
- Republican River
