This is a list of rivers of Yukon.

Arctic Ocean watershed

• Mackenzie River watershed
  • Upper Liard River
    • Rancheria River
      • Little Rancheria River
    • Frances River
    • Hyland River
    • Coal River
    • La Biche River
    • Beaver River (Liard River tributary)
      • Whitefish River
    • Kotaneelee River
    • Smith River
    • South Nahanni River
  • Peel River
    • Ogilvie River
    • Blackstone River
    • Hart River
    • Wind River
    • Bonnet Plume River
    • Snake River
• Firth River
• Malcolm River
• Trail River
• Babbage River
• Blow River
• Clarence River

Bering Sea watershed

• Yukon River 1,973 miles (3,175 km)
  • Marsh Lake
    • McClintock Creek
    • Tagish River
      • Tagish Lake
        • Bennett Lake
        • Atlin Lake
        • Nares River
          • Little Atlin Lake
          • Partridge River
  • Teslin River
    • Teslin Lake
      • Nisutlin River
        • Wolf Rover
    • Dän Tàgé
    • Morley River
  • Takhini River
    • Kusawa Lake
    • Swift River
  • Big Salmon River
    • Quiet Lake
  • Nordenskiold River
  • Pelly River
    • Hoole River
    • Ross River
    • South MacMillan River
    • Macmillan River
  • Stewart River
    • Beaver River (Stewart River)
    • Hess River
    • McQuesten River
    • Scroggie Creek
  • White River
    • Donjek River
      • Kluane River
        • Kluane Lake
          • Slims River
      • Nisling River
  • Sixtymile River
    • Miller Creek
  • Indian River
  • Klondike River
    • Bonanza Creek
      • Eldorado Creek
  • Fortymile River
  • Porcupine River
    • Miner River
    • Fishing Branch
    • Bell River
      • Rock River
      • Eagle River
    • Old Crow River
    • Bluefish River
    • Rapid River
  • Kandik River

Pacific Ocean watershed

• Alsek River
  • Kaskawulsh River
  • Jarvis River
  • Dezadeash River
    • Aishihik River or Canyon Creek
• Tatshenshini River
  • Klukshu River
  • Blanchard River (Yukon)

Alphabetical list