MirGeneDB
MirGeneDB2.0
MirGeneDB2.0
Content
DescriptionMirGeneDB is a database of manually curated microRNA genes that have been validated and annotated by experts.
Contact
Research centerArctic University of Norway, Science for Life Laboratory, Oslo University Hospital, Dartmouth College
AuthorsBastian Fromm & Kevin J. Peterson
Primary citationBastian Fromm, Eirik Høye, Diana Domanska, Xiangfu Zhong, Ernesto Aparicio-Puerta, Vladimir Ovchinnikov, Sinan U Umu, Peter J Chabot, Wenjing Kang, Morteza Aslanzadeh, Marcel Tarbier, Emilio Mármol-Sánchez, Gianvito Urgese, Morten Johansen, Eivind Hovig, Michael Hackenberg, Marc R Friedländer, Kevin J Peterson, MirGeneDB 2.1: toward a complete sampling of all major animal phyla, Nucleic Acids Research, 2021, https://doi.org/10.1093/nar/gkab1101
Release date2015, 2020, 2021
Access
Websitehttp://www.mirgenedb.org/
Miscellaneous
Version2.1
Curation policymanual

MirGeneDB is a database of manually curated microRNA genes that have been validated and annotated as initially described in Fromm et al. 2015[1] and Fromm et al. 2020.[2] MirGeneDB 2.1[3] includes more than 16,000 microRNA gene entries representing more than 1,500 miRNA families from 75 metazoan species and published in the 2022 NAR database issue. All microRNAs can be browsed, searched and downloaded.

References

  1. ^ Fromm, Bastian; Billipp, Tyler; Peck, Liam E.; Johansen, Morten; Tarver, James E.; King, Benjamin L.; Newcomb, James M.; Sempere, Lorenzo F.; Flatmark, Kjersti; Hovig, Eivind; Peterson, Kevin J. (2015-11-23). "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome". Annual Review of Genetics. 49 (1): 213–242. doi:10.1146/annurev-genet-120213-092023. ISSN 0066-4197. PMC 4743252. PMID 26473382.
  2. ^ Fromm, Bastian; Domanska, Diana; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind; Hackenberg, Michael (2020-01-08). "MirGeneDB 2.0: the metazoan microRNA complement". Nucleic Acids Research. 48 (D1): D132–D141. doi:10.1093/nar/gkz885. ISSN 0305-1048. PMC 6943042. PMID 31598695.
  3. ^ Fromm, Bastian; Høye, Eirik; Domanska, Diana; Zhong, Xiangfu; Aparicio-Puerta, Ernesto; Ovchinnikov, Vladimir; Umu, Sinan U; Chabot, Peter J; Kang, Wenjing; Aslanzadeh, Morteza; Tarbier, Marcel (2021-11-25). "MirGeneDB 2.1: toward a complete sampling of all major animal phyla". Nucleic Acids Research. 50 (D1): D204–D210. doi:10.1093/nar/gkab1101. ISSN 0305-1048. PMC 8728216. PMID 34850127.

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