Class of bacteria
The Acidimicrobiia are a class of Actinomycetota , in which three families, eight genera, and nine species have been described, Acidimicrobium ferrooxidans is the type species of the order.[1]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[3] and National Center for Biotechnology Information (NCBI).[4]
120 marker proteins based GTDB 08-RS214[9] [10] [11]
Acidimicrobiia
"Actinomarinales"
"Actinomarinaceae"
Ca. "Actinomarina" Ghai et al. 2013
Acidimicrobiales
"Poriferisodalaceae"
"Ca. Poriferisodalis" Nguyen 2022
"Rhabdothermincolaceae"
Rhabdothermincola Liu et al. 2021
Iamiaceae
Aquihabitans Jin et al. 2013
Iamia Kurahashi et al. 2009
"Actinomarinicolaceae"
Actinomarinicola He et al. 2020
"Microtrichaceae"
"Ca. Neomicrothrix" corrig. Blackall et al. 1996 ["Ca. Microthrix " Blackall et al. 1996 non Ragonot 1888 ]
"Aldehyrespiratoraceae"
"Ca. Aldehyrespirator" Nguyen 2022
"Hopanoidivoracaceae"
"Ca. Hopanoidivorans" Nguyen 2022
"Ca. Poriferisocius" Nguyen 2022
Genera incertae sedis [ edit ] "Spongiisociales" Nguyen 2022
"Spongiisociaceae" Nguyen 2022
"Candidatus Spongiisocius" Nguyen 2022
Acidimicrobiales
Acidithiomicrobium Davis-Belmar & Norris 2009
"Microtrichaceae"
"Candidatus Limnosphaera" Kim, Kang & Cho 2017
^ a b Stackebrandt, E.; Rainey, F. A.; Ward-Rainey, N. L. (1997-04-01). "Proposal for a New Hierarchic Classification System, Actinobacteria classis nov" . International Journal of Systematic Bacteriology . 47 (2): 479–491. doi :10.1099/00207713-47-2-479 . ISSN 0020-7713 .
^ Norris PR (2012). "Class II. Acidimicrobiia class. nov.". In Goodfellow M, Kämpfer P, Trujillo ME, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology . Vol. 5 (The Actinobacteria ), part B (2nd ed.). New York: Springer. p. 1968.
^ a b Euzéby JP, Parte AC. "Acidimicrobiia " . List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 22, 2021 .
^ Sayers; et al. "Acidimicrobiia" . National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20 .
^ Hu D, Cha G, Gao B. (2018). "A phylogenomic and molecular markers-based analysis of the class Acidimicrobiia " . Frontiers in Microbiology . 9 : 987. doi :10.3389/fmicb.2018.00987 . PMC 5962788 . PMID 29867887 .
^ "The LTP" . Retrieved 20 November 2023 .
^ "LTP_all tree in newick format" . Retrieved 20 November 2023 .
^ "LTP_08_2023 Release Notes" (PDF) . Retrieved 20 November 2023 .
^ "GTDB release 08-RS214" . Genome Taxonomy Database . Retrieved 10 May 2023 .
^ "bac120_r214.sp_label" . Genome Taxonomy Database . Retrieved 10 May 2023 .
^ "Taxon History" . Genome Taxonomy Database . Retrieved 10 May 2023 .
Terrabacteria BV1, BV3, BV5
others Cyanoprokaryota
Cyanobacteriota
"Margulisiibacteriota"
"Marinamargulisbacteria"
"Riflemargulisbacteria"
"Saganbacteria"
"Termititenacia"
Firmicutes BV3 Low GC
Bacillota
Bacillota A
"Clostridiia "
"Thermoanaerobacteria"
"Thermosediminibacteria"
Bacillota D
Bacillota E
"Sulfobacillia"
"Symbiobacteriia"
"Thermaerobacteria"
Bacillota G
"Hydrogenisporia"
Limnochordia
"Desulfotomaculota"
"Carboxydocellia"
"Carboxydothermia"
"Dehalobacteriia"
"Desulfitobacteriia"
"Desulfotomaculia"
"Moorellia"
"Peptococcia"
"Syntrophomonadia"
"Thermincolia"
"Halanaerobiaeota"
"Selenobacteria"
CPR group Thermotogida
Fusobacterida
Fusobacteriota
"Macinerneyibacteriota"
"Muiribacteriota"
"Rifleibacteriota"
"Walliibacteriota"
Hydrobacteria BV2, BV4
Clade 1
"Aerophobota"
"Auribacterota"
"Ancaeobacteria"
"Auribacteria"
"Erginobacteria"
"Tritonobacteria"
"Desantisiibacteriota"
Elusimicrobiota
Elusimicrobiia
Endomicrobiia
"Firestoneibacteriota"
"Goldiibacteriota"
"Omnitrophota"
"Omnitrophia"
"Velamenicoccia"
"Ratteibacteriota"
Clade 2
"Abyssubacteria"
"Hinthialibacterota"
"Hydrogenedentota"
"Poribacteriota "
"Saltatorellota"
"Sumerlaeota"
Spirochaeto bacteriobiontes PVC group (Planctobacteria)FCB group (Sphingobacteria)
Bacteroidota
Calditrichota
"Cloacimonadota"
"Coatesiibacteriota"
"Cosmopoliota"
"Delongiibacteriota"
"Edwardsiibacteriota"
"Eiseniibacteriota"
"Electryoneota"
"Electryoneia"
"Tariuqbacteria"
"Fermentibacterota"
Fibrobacterota
Gemmatimonadota
Gemmatimonadia
"Glassbacteria"
"Heilongiota"
"Hydrothermota"
"Hydrothermia"
"Stahlbacteria"
"Krumholzibacteriota"
"Latescibacterota"
"Handelsmanbacteria"
"Latescibacteria"
"Neomarinimicrobiota "
"Marinisomatota"
"Tianyaibacteriota"
"Zixiibacteriota "
Proteobacteria BV2
others
"Qinglongiota"
"Salinosulfoleibacteria"
"Teskebacteria"
Acidimicrobiia Acidimicrobiales