This article lists the orders of the Bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[2] and the phylogeny is based on 16S rRNA-based LTP release 132 by The All-Species Living Tree Project.[3]

Phylogeny

National Center for Biotechnology Information (NCBI) taxonomy was initially used to decorate the genome tree via tax2tree. The 16S rRNA-based Greengenes taxonomy is used to supplement the taxonomy particularly in regions of the tree with no cultured representatives. List of Prokaryotic names with Standing in Nomenclature (LPSN) is used as the primary taxonomic authority for establishing naming priorities. Taxonomic ranks are normalised using phylorank and the taxonomy manually curated to remove polyphyletic groups.[4][5][6][7][8]

Cladogram was taken from GTDB release 08-RS214 (28 April 2023).[9][10][11]

Bacteria
Chloroflexae

Chloroflexota

"Dormiibacterota"

Armatimonadota

Eremiobacterota

Firmicutes

Bacillota E

Bacillota G

"Halanaerobiaeota" (Bacillota F)

"Desulfotomaculota" (Bacillota B)

"Selenobacteria" (Bacillota C)

Bacillota A

Bacillota D

Bacillota s.s.

"Actinobacteriobiontes"

Actinomycetota

Cyanoprokaryota

"Margulisiibacteriota"

Cyanobacteria

"Thermotogida"
"Synergistetes"
"Thermocalda"
"Fusobacterida"

"Walliibacteriota"

"Muiribacteriota"

"Rifleibacteriota"

"Macinerneyibacteriota"

Fusobacteriota

"Bipolaricaulota"

Deinococcota

"Hydrobacteria"

"Goldiibacteriota"

"Firestoneibacteriota"

Elusimicrobiota

"Desantisiibacteriota"

"Aerophobota"

"Auribacterota"

"Ratteibacteriota"

"Omnitrophota"

"Spirochaetobacteriobiontes"

"Lindowiibacteriota"

"Babelota"

Spirochaetota

"Planctobacteria"

"Hinthialibacterota" (OLB16)

"Sumerlaeota"

"Poribacteriota"

"Abyssubacteria"

"Hydrogenedentota"

"FCB group"

"Coatesiibacteriota" (RBG-13-66-14)

"Fermentibacterota"

"Edwardsiibacteriota"

"Latescibacterota"

"Zixiibacteriota"

"Eiseniibacteriota"

"Krumholzibacteriota"

Gemmatimonadota

"Hydrothermota" (WOR-3)

"Cloacimonadota"

Fibrobacterota

"Delongiibacteriota"

"Electryoneota" (AABM5-125-24)

"Marinisomatota"

"Cosmopoliota"

Calditrichota

Bacteroidota

"Proteobacteria"

Acidobacteriota

"Deltabacteria"

"Lambdaproteobacteria" {SAR324}

Bdellovibrionota

"Lernaellota" (FEN-1099)

"Binatota" (Desulfobacterota B)

Myxococcota

"Deferrisomatota" (Desulfobacterota C)

"Deferrimicrobiota" (Desulfobacterota E)

"Moduliflexota"

"Methylomirabilota"

"Schekmaniibacteriota"

"Tectimicrobiota"

Nitrospinota

Nitrospirota

Desulfuromonadia {Desulfobacterota F}

Thermodesulfobacteriota

"Aquificida"

"Dadaibacteriota" (Desulfobacterota D)

"Calescibacteriota"

Syntrophorhabdia {Desulfobacterota G}

"Acidulodesulfobacteriota"

"Leptospirillaeota"

Pseudomonadota

Clade Terrabacteria

Phylum Chloroflexota

Phylogeny of Chloroflexota[9][10][11]
"Limnocylindria"

"Limnocylindrales"

Ktedonobacteria

Ktedonobacterales

"Dehalococcoidotia"

Dehalococcoidales

Tepidiformales

Dehalococcoidia
"Caldilineotia"

Ardenticatenales

"Caldilineidae"

Caldilineales

"Anaerolineidae"

J036

Thermoflexales

"Promineofilales"

Aggregatilineales

Anaerolineales

"Caldilineia"
"Chloroflexotia"

"Thermobaculales"

Thermomicrobiales

Chloroflexales

Chloroflexia

Phylum Dormiibacterota

Phylum Armatimonadota

Phylogeny of Armatimonadota[9][10][11]
"Heboniibacteriia"

"Heboniibacterales"

"Zipacnadia"

"Zipacnadales"

Abditibacteriia

Abditibacteriales

HRBIN17

HRBIN17

UBA5829

UBA5829

Fimbriimonadia

Fimbriimonadales

Chthonomonadetes

Chthonomonadales

Armatimonadia

Armatimonadales

Capsulimonadales

Phylum Eremiobacterota

Phylogeny of Eremiobacterota[9][10][11]
"Xenobia"

"Xenobiales"

"Eremiobacteriia"

"Eremiobacterales"

"Baltobacterales"

Clade Firmicutes

Firmicutes incertae sedis

Phylum Bacillota E

Phylogeny of Bacillota E[9][10][11]
"Thermaerobacteria"

"Thermaerobacterales"

UBA3575

UBA3575

"Symbiobacteriia"

"Symbiobacteriales"

"Sulfobacillia"

"Sulfobacillales"

Phylum Bacillota G

Phylum "Halanaerobiaeota"

Phylogeny of Halanaerobiia[9][10][11]

"Anoxybacterales"

Halanaerobiales

"Halobacteroidales"

Phylum Bacillota D

Phylogeny of Bacillota D[9][10][11]
"Proteinivoracia"

"Proteinivoracales"

"Natranaerobiia"

Natranaerobiales

"Dethiobacteria"

SKNC01

"Dethiobacterales"

Phylum "Selenobacteria"

Phylogeny of Selenobacteria[9][10][11]

Acidaminococcales

Veillonellales

"Sporomusales" A

"Sporomusales" C

"Sporomusales"

"Anaeromusales"

UMGS1260

"Propionisporales"

"Dendrosporobacterales"

Selenomonadales

Phylum "Desulfotomaculota"

Phylogeny of Desulfotomaculota[9][10][11]
"Syntrophomonadia"

"Syntrophomonadales"

"Peptococcia"

"Thermanaerosceptrales"

"Peptococcales"

"Dehalobacteriia"

"Dehalobacteriales"

"Avidehalobacterales"

"Cryptoclostridiales"

"Desulfitobacteriia"

"Heliobacteriales"

"Desulfitobacteriales"

DSM‑12270

"Thermacetogeniales"

"Moorellia"

DULZ01

"Calderihabitantales"

"Desulfitibacterales"

Moorellales

"Carboxydocellia"

"Carboxydocellales"

"Thermincolia"

"Thermincolales"

"Carboxydothermia"

"Carboxydothermales"

"Desulfotomaculia"

"Ammonificales"

"Desulfotomaculales"

Phylum Bacillota A

Phylogeny of Bacillota A[9][10][11]
"Thermosediminibacteria"

Koleobacterales

Thermosediminibacterales

"Thermoanaerobacteria"

"Caldicellulosiruptorales"

Thermoanaerobacterales

Clostridiia

Clostridiales

"Lutisporales"

Eubacteriales

Tissierellales

"Peptostreptococcales"

"Mahellales"

"Caldicoprobacterales"

"Christensenellales"

"Merdicolales"

"Egerieisomatales"

"Saccharofermentanales"

"Acetivibrionales A

"Acetivibrionales"

"Petroclostridiales"

"Monoglobales"

"Avimonoglobales"

"Oscillospirales"

"Lachnospirales"

)

Phylum "Bacillota"

Phylogeny of Bacillota[9][10][11]
"Bacillia"

"Pasteuriales"

"Kyrpidiales"

"Tumebacillales"

"Alicyclobacillales"

"Desulfuribacillales"

"Calditerricolales"

Bacillales F

"Thermicanales"

"Brockiales"

"Thermoactinomycetales"

DSM-22679

"Tepidibacillales"

"Paenibacillales"

"Aneurinibacillales"

"Brevibacillales"

"Rubeoparvulales"

"Caldalkalibacillales"

Bacillales_K

"Bacillidae"

Bacillales E

Bacillales G

Bacillales H

Bacillales I

Bacillales D

Bacillales

"Harrysmithimonadales"

"Exiguobacteriales"

"Staphylococcales"

"Erysipelotrichidae"

Culicoidibacterales

Haloplasmatales

"Bathyoplasmales"

"Izemoplasmatales"

Acholeplasmatales

"Aphodocolales"

RFN20

Erysipelotrichales

Mycoplasmatales

Lactobacillales

Phylum Actinomycetota

Phylogeny of Actinomycetota[9][10][11]
"Humimicrobiia"

"Hakubellales"

"Humimicrobiales"

"Aquicultoria"

"Aquicultorales"

"Geothermocultorales"

"Oleimmundimicrobiales"

"Subteraquimicrobiales"

Coriobacteriia

Coriobacteriales

"Geothermincolia"

"Geohydrothermomicrobiales"

"Geothermincolales"

Rubrobacteria

Rubrobacterales

Thermoleophilia

Gaiellales

Miltoncostaeales

Thermoleophilales

Clade Cyanoprokaryota

Phylum "Margulisiibacteriota"

Phylogeny of Margulisiibacteriota[9][10][11]

"Saganbacteria"

"Marinamargulisbacteria"

"Riflemargulisbacteria"

"Termititenacia"

Phylum "Cyanobacteriota"

Phylogeny of Cyanobacteriota[9][10][11]
"Melainabacteria"

"Caenarcanales"

"Obscuribacterales"

"Vampirovibrionales"

"Gastranaerophilales"

"Sericytochromatia"

UBA7694

S15B-MN24

Cyanobacteria
"Gloeobacteria"

Gloeobacterales

"Phycobacteria"

Aegeococcales

Thermostichales

Pseudanabenales

Gloeoemargaritales

Prochlorotrichales

"Acaryochloridales"

"Limnotrichales"

Prochlorotrichales

Synechococcales

Nodosilineales

"Phormidesmidales"

"Elainellales"

Oculatellales

Leptolyngbyales

Cyanobacteriales

Clade "Thermotogida"

Phylum Atribacterota

Phylum Synergistota

Phylum "Lithacetigenota"

Phylum Dictyoglomota

Phylum "Thermodesulfobiota"

Phylum Coprothermobacterota

Phylum "Caldisericota"

Phylum Thermotogota

Phylogeny of Thermotogota[9][10][11]

Mesoaciditogales

Petrotogales

Thermotogales

Clade

Clade "Fusobacterida"

Phylum "Muiribacteriota"

Phylum "Rifleibacteriota"

Phylum "Macinerneyibacteriota"

Phylum Fusobacteriota

Clade Candidate Phyla Radiation

Phylogeny of Patescibacteria[9][10][11]

"Wirthbacteria" (CG2-30-54-11)

"Microgenomates"

"Dojkabacteria"

"Katanobacteria"

"Microgenomatia"

"Woykebacterales"

"Curtissbacterales"

"Daviesbacterales"

"Roizmanbacterales" (UBA1406)

"Gottesmanbacterales" (UBA10105)

"Levybacterales"

"Shapirobacterales" (UBA12405)

GWA2-44-7

"Chazhemtobacteriales"

cluster
"Gracilibacteria"
"Absconditabacteria"

BD1-5

"Absconditabacterales"

"Gracilibacteria"

"Abawacabacterales" (RBG-16-42-10)

"Fertabacterales" (UBA4473)

"Peregrinibacterales" (UBA1369)

"Peribacterales"

cluster
"Saccharibacteria"

"Berkelbacteria"

"Kazanbacteria" (Kazan)

"Howlettbacteria"

"Saccharimonadia"

cluster
"Parcubacteria"

"Andersenbacteria"

"Doudnabacteria"

"Torokbacteria" (GCA-2792135)

ABY1

"Moisslbacterales" (UBA2591)

"Falkowbacterales"

"Buchananbacterales"

"Uhrbacterales" (GWA2-46-9)

"Magasanikbacterales"

"Kuenenbacterales" (UBA2196)

"Jacksonbacterales" (UBA9629)

"Komeilibacterales" (UBA1558)

"Kerfeldbacterales" (SBBC01)

"Veblenbacterales"

"Paceibacteria"

"Moranbacterales"

UBA9983_A

"Paceibacterales"

UBA6257

"Yanofskybacterales" (2-02-FULL-40-12)

"Spechtbacterales"

"Portnoybacterales"

"Parcunitrobacterales" (GWA2-38-13b)

"Azambacterales" (UBA10092)

"Terrybacterales"

"Sungbacterales"

"Ryanbacterales"

UBA9983

cluster

Phylum "Elulota"

Phylum "Patescibacteria"

Clade

Phylum "Bipolaricaulota"

Phylum Deinococcota

Clade Hydrobacterida

Clade

Phylum "Goldiibacteriota"

Phylum Elusimicrobiota

Phylum "Aerophobota"

Phylum "Auribacterota"

Phylogeny of "Auribacterota"[9][10][11]
"Tritonobacteria"

"Tritonobacterales"

"Erginobacteria"

"Erginobacterales"

"Auribacteria"

"Auribacterales"

"Ancaeobacteria"

"Ancaeobacterales"

"Theseobacterales"

Phylum "Omnitrophota"

Phylogeny of Omnitrophota[9][10][11]
"Omnitrophia"

"Omnitrophales"

"Velamenicoccia"

"Aquiviventales"

"Kaelpiales"

"Tantalellales"

"Gorgyraeales"

"Aquitaenarimonadales"

JABMRG01

"Pluralincolimonadales"

"Taenaricolales"

"Velesiimonadales"

"Duberdicusellales"

"Ghiorseimicrobiales"

"Gygaeellales"

"Velamenicoccales"

"Zapsychrales"

Clade Spirochaetobacteriobiontes

Phylum "Babelota"

Phylum Spirochaetota

Phylogeny of Spirochaetota[9][10][11]
"Leptospirae"

"Turneriellales"

Leptospirales

"Leptospiria"
"Euspirochaetae"
"Brevinematia"

Brevinematales

"Brachyspiria"

Brachyspirales

"Exilispiria"

"Exilispirales"

Spirochaetia

"Borreliales"

"Entomospirales"

DSM-17781

Spirochaetales E

"Sphaerochaetales"

"Marispirochaetales"

"Sediminispirochaetales"

Spirochaetales A

"Salinispirales"

"Treponematales"

Clade Planctobacteria

Phylum Planctomycetota

Phylogeny of Planctomycetota[9][10][11]

Phylum Chlamydiota

Phylum Verrucomicrobiota

Phylogeny of Verrucomicrobiota[9][10][11]
Lentisphaeria

Lentisphaerales

Oligosphaerales

Victivallales

Kiritimatiellae

"Spyradenecales"

Kiritimatiellales

"Verrucomicrobiia"

Opitutales

"Limisphaerales"

"Methylacidiphilales"

Terrimicrobiales

Verrucomicrobiales

Clade

Phylum "Saltatorellota"

Phylum "Hinthialibacterota"

Phylum "Sumerlaeota"

Phylum "Poribacteriota"

Phylum "Hydrogenedentota"

Clade FCB group

Phylum "Heilongiota"

Phylum "Neomarinimicrobiota"

Phylum "Tianyaibacteriota"

Phylum "Fermentibacterota"

Phylum "Latescibacterota"

Phylum "Krumholzibacteriota"

Phylum Gemmatimonadota

Phylum "Hydrothermota"

Phylum "Cloacimonadota"

Phylum Fibrobacterota

Phylum "Electryoneota"

Phylum "Marinisomatota"

Phylum "Cosmopoliota"

Phylum Calditrichota

Phylum Bacteroidota

Phylogeny of Bacteroidota[9][10][11]

Clade Proteobacteria

Phylum "Canglongiota"

Phylum Acidobacteriota

Phylogeny of Acidobacteriota[9][10][11]

Phylum SAR324

Phylum Bdellovibrionota

Phylogeny of Bdellovibrionota[9][10][11]

Phylum Lernaellota

Phylum "Binatota"

Phylum Myxococcota

Phylogeny of Myxococcota[9][10][11]
"Bradymonadia"

Bradymonadales

Polyangia

Haliangiales

Nannocystales

Polyangiales

Phylum "Deferrisomatota"

Phylum "Deferrimicrobiota"

Phylum "Moduliflexota"

Phylum "Methylomirabilaeota"

Phylum "Tectimicrobiota"

Phylum Nitrospinota

Phylum Nitrospirota

Phylum Desulfobacterota F

Phylum Thermodesulfobacteriota

Phylogeny of Thermodesulfobacteriota[9][10][11]
"Zymogeniia"

"Zymogeniales"

Desulfobulbia

Desulfobulbales

Dissulfuribacteria

Dissulfuribacterales

"Thermodesulfobacteriia"

Thermodesulfobacteriales

Desulfofervidia

"Desulfofervidales"

Desulfovibrionia

Desulfovibrionales

Desulfobaccia

Desulfobaccales

Desulfarculia

"Adiutricales"

Desulfarculales

"Desulfatiglandia"

Desulfatiglandales

Desulfobacteria

Desulfobacterales

Phylum "Calescibacteriota"

Phylum Desulfobacterota G

Phylum Acidulodesulfobacteriota

Phylum "Thermosulfidibacterota"

Phylum "Chrysiogenota"

Phylum Deferribacterota

Phylum Aquificota

Phylum Campylobacterota

Phylum Leptospirillaeota

Phylum Pseudomonadota

Phylogeny of Pseudomonadota[9][10][11]
"Caulobacteria"

"Enterousiales"

"Scatocolales"

"Rickettsiidae"

Rhizobiales A

Rickettsiales A

"Pelagibacterales"

Rickettsiales

"Caulobacteridae" cont'd

"Mariprofundia"

Mariprofundales

"Magnetococcia"

Magnetococcales

"Pseudomonadia"
"Enterobacteriae"

"Comchoanobacterales"

"Thalassomicrobiales"

"Evansiales"

Enterobacterales

UBA11654

"Foliamicales"

"Porifericomitales"

"Porisulfidales"

Immundisolibacterales

Acidiferrobacterales

Arenicellales

"Acidithiobacillidae"

Acidithiobacillales

Thiohalorhabdales

"Neisseriidae"

Burkholderiales

"Pseudomonadidae" cont'd

Phylogeny of "Caulobacteridae"[9][10][11]

"Paracaedibacterales"

Holosporales

"Caedimonadales"

"Micavibrionales"

"Puniceispirillales"

"Thalassobaculales"

"Marivibrionales"

Rhodospirillales A

"Dongiales"

"Tagaeales"

"Stellales"

"Elsterales"

"Oceanibaculales"

Kiloniellales

"Inquilinales"

"Azospirillales"

Acetobacterales"

Rhodospirillales

"Reyranellales"

"Planktothermales"

"Tistrellales"

"Geminicoccales"

"Ferrovibrionales"

Minwuiales

Sneathiellales

Sphingomonadales

"Zavarziniales"

Micropepsales

Caulobacterales

Rhodobacterales

"Parvibaculales"

Hyphomicrobiales

Phylogeny of "Pseudomonadidae"[9][10][11]
"Chromatiae"

"Nitrosococcales"

UBA4486

Beggiatoales

"Inmiraniales"

"Thioalbales"

"Tenderiales"

"Sulfuriflexales"

Thiohalospirales

"Thiohalophilales"

Thiohalomonadales

"Reidiellales"

"Thiogranales"

Thiohalobacterales

"Thiopontiales"

Chromatiales

Methylococcales

Thiotrichales

"Ectothiorhodospirales"

Halofilales"

"Granulosicoccales"

"Halothiobacillales"

"Competibacterales"

"Nitrococcales"

"Macondimonadales"

Nevskiales

SLND01

"Woeseiales"

"Steroidobacterales"

Xanthomonadales

Cardiobacteriales

"Thioglobales"

"Thiomicrospirales"

"Piscirickettsiales"

"Berkiellales"

"Francisellales"

"Aquicellales"

"Diplorickettsiales"

"Coxiellales"

Legionellales

"Pelagibaculales"

"Vibrionales"

Pseudomonadales

List of Candidate Phyla

See also

References

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  2. ^ Sayers; et al. "Bacteria". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
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  10. ^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
  11. ^ a b c d e f g h i j k l m n o p q r s t u v w x y z aa ab ac "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.