The following article shows a list of caves in Malaysia:

Sabah

• Agop Batu Tulug Caves
• Batu Punggul Cave
• Batu Timbang Cave
• Baturong Cave
• Gomantong Caves
• Keningau Cave
• Madai Cave
• Punan Batu Cave
• Sinobang Cave
• Sipit Cave
• Tapadong Cave

Sarawak

• Biocyclone Cave
• Black Rock Cave
• Batu Caves
• Clearwater Cave
• Cobra Cave
• Cobweb Cave
• Daud's Cave
• Deception Cave
• Deer Cave
• Deliverance Cave
• Disappointment Cave
• Drunken Forest Cave
• Fairy Cave
• Green Cathedral Cave
• Green Cave
• Hornbill's Secret Cave
• Lagang's Cave
• Lascaux Cave in Malaysia
• Laing's Cave
• Leopard Cave
• Lori's Cave
• Metric Cave
• Niah Caves
• Pepper Leaf Cave
• Perseverance Cave
• Racer Cave
• Sakai's Cave
• Sarawak Chamber
• Snail Shell Cave
• Snake Track Cave
• Solo Pot
• Stone Horse Cave
• Tardis Cave
• Thunder Cave
• Tiger Cave
• Turtle Cave
• Ulat Cincin Cave
• Viper's Pit
• White Rock Cave
• Wind Cave
• and more than 200 others not listed

Peninsular Malaysia

There are at least 445 limestone hills in Peninsular Malaysia.^[1]

Kedah

• Gua Gunung Keriang
• Gua Kerbau
• Caves of Baling
  • Gua Air
  • Gua Sireh
  • Gua Jepun
  • Gua Kelambu
  • Gua Tembus
• Caves of Langkawi
  • Gua Langsir
  • Gua Kelawar
  • Gua Landak
  • Gua Buaya
  • Gua Dangli
  • Gua Cerita
  • Gua Pasir Dagang
  • Gua Pinang
  • Gua Tok Sabung

Kelantan

• Caves of Dabong
  • Gua Ikan
  • Gua Keris
• Caves of Gua Musang
  • Gua Musang (namesake)
  • Gua Chiku 2
  • Gua Madu
  • Gua Cha
• Gunung Reng

Pahang

• Gua Charas
• Gunung Senyum
• Kenong Rimba Park
• Kota Gelanggi
• Caves of Merapoh
  • Gua Hari Malaysia (also known as Gua Padang Kawad)
  • Gua Air Mata Dayang
  • Gua Seribu Cerita
  • Gua Jinjang Pelamin
  • Gua Tahi Bintang

Perak

• Caves of Kinta Valley (see also Kinta Valley National Geopark)
  • Gua Kandu
  • Gua Air
  • Gua Angin
  • Gua Kanthan
  • Gua Tempurung
  • Gua Tambun
  • Gua Datok
  • Ipoh cave temples
• Caves of Lenggong
  • Gua Gunung Runtuh
  • Gua Tok Giring
  • Gua Teluk Kelawar
  • Gua Ngaum
  • Gua Badak
  • Gua Asar
  • Gua Kajang

Perlis

• Gua Kelam
• Gua Wang Burma
• Gua Bintong

Selangor

• Batu Caves
  • Art Gallery Cave
  • Dark Cave
  • Temple Cave

Terengganu

• Caves at Kenyir Lake
  • Gua Bewah
  • Gua Taat

Negeri Sembilan

So far, Negeri Sembilan is the only known state to host two types of caves.

• Gua Batu Maloi (talus)
• Pasoh Caves^[2] (karstic)