This is a list of football clubs in the Republic of Moldova. The list only includes clubs that currently play in the Moldovan league system. The list is updated as of the 2020–21 season.

Moldovan National Division

• Codru Lozova
• Dacia Buiucani
• Dinamo-Auto Tiraspol
• Florești
• Milsami Orhei
• Petrocub Hîncești
• Sfîntul Gheorghe Suruceni
• Sheriff Tiraspol
• Speranța Nisporeni
• Zimbru Chișinău

Moldovan "A" Division

• Bălți
• Cahul-2005
• Fălești
• Grănicerul Glodeni
• Iskra Rîbnița
• Olimp Comrat
• Real Succes Chișinău
• Sheriff-2 Tiraspol
• Sireți
• Spartanii Selemet
• Speranța Drochia
• Sucleia
• Tighina
• Victoria Bardar

Moldovan "B" Division

North

• Bogzești
• Codru-Juniori
• Cruiz-Plus
• Edineț
• FCM Ungheni
• Inter Soroca
• Mănoilești
• Olimpia Natalievca
• Pepeni
• Rîșcani
• Sîngerei
• Visoca

South

• Academia Viitorul
• AFR Ialoveni
• Cimișlia
• Congaz
• Cricova
• Maiak Chirsova
• Saksan
• Sinteza Căușeni
• Slobozia Mare
• Socol Copceac
• Sporting Trestieni
• Văsieni