The following is a list of universities in Estonia.

Public comprehensive universities

• Tallinn University (Tallinna Ülikool)
• Tallinn University of Technology (Tallinna Tehnikaülikool)
• University of Tartu (Tartu Ülikool)

Public specialized universities

• Estonian Academy of Arts (Eesti Kunstiakadeemia), Tallinn
• Estonian Academy of Music and Theatre (Eesti Muusika- ja Teatriakadeemia), Tallinn
• Estonian Academy of Security Sciences (Sisekaitseakadeemia), Tallinn
• Estonian Aviation Academy (Eesti Lennuakadeemia), Tartu-Reola
• Estonian Maritime Academy (Eesti Mereakadeemia), Tallinn
• Estonian National Defence College (KVÜÕA Kõrgem Sõjakool), Tartu
• Estonian Public Service Academy, Tallinn
• Estonian University of Life Sciences (Eesti Maaülikool), Tartu
• Tallinn University of Applied Sciences (Tallinna Tehnikakõrgkool), Tallinn
• Pallas University of Applied Sciences (Kõrgem Kunstikool Pallas), Tartu

Private universities

• Estonian Business School (EBS), Tallinn

Multinational institutions

• Baltic Defence College (Balti Kaitsekolledž), Tartu

Private institutions

• Estonian School of Diplomacy (Eesti Diplomaatide Kool), Tallinn
• Euroacademy (Euroakadeemia), Tallinn
• Institute of Theology (Usuteaduse Instituut), Tallinn
• Estonian Entrepreneurship University of Applied Sciences (Eesti Ettevõtluskõrgkool Mainor), Tallinn
• Tartu Academy of Theology (Tartu Teoloogia Akadeemia), Tartu
• Institute of Liberal Arts, Rakvere

Unsorted

• Tallinn School of Service
• Tallinn Health Care College